HighPowerComputing

SLURM script example

The SLURM script contains two portions: the first request resources from the supercomputer, the second contains the code you actually want to run. In order to make sure your code runs properly, make sure you are changing to the proper working direcotry with the "cd" command. Then simply call the function you want to run. Here is an example SLURM script where we are simply running the previous example utilizing the "argfile". For information on the anatomy of SLURM scripts please see information from MSI.

????? ALSO LIST THE GENERAL RESOURCES NEEDED TO STARTUP THIS ANALYSIS FOR OTHER TyPES OF CLUSTERS????

UNDER CONSTRUCTION

Adjusted-HE with regression version (Still being tested)

For large sample size (e.g. biobank size), it is suggested to use AdjHE_reg_s1.py and AdjHE_reg_s2.py to perform linear regression to get the heritability estimation. In our estimation of the UKB data, we partitioned the whole data set (n = 305,639) into 200 parts and allocated 15GB memory to each job. And the maximum running time for 200 jobs was less than 10 minutes (not include construcing GRM and computing PCs).