Protein coverage plot and fasta sequence data support

[henninggaertner]

Description

fixes #541

Changes

• added new importing step for fasta protein data
• added new protein coverage plot

Testing

TODO

PR checklist

Development

• If necessary, I have updated the documentation (README, docstrings, etc.)
• If necessary, I have created / updated tests.

Mergeability

• main-branch has been merged into local branch to resolve conflicts
• The tests and linter have passed AFTER local merge
• The code has been formatted with black

Code review

• I have self-reviewed my code.
• At least one other developer reviewed and approved the changes

[github-actions]

Coverage report

Click to see where and how coverage changed

File	Statements	Missing	Coverage	Coverage (new stmts)	Lines missing
protzilla
disk_operator.py					43-47, 50-59
run.py
run_helper.py
steps.py					458
protzilla/constants
colors.py					29-47
protzilla/data_analysis
differential_expression_kruskal_wallis.py					227
differential_expression_mann_whitney.py					266
plots.py
protein_coverage.py					63-81, 104, 153-232, 245-335, 341-362, 371-380, 396-415
protein_graphs.py
ptm_analysis.py					56, 123-125
protzilla/data_integration
di_plots.py
protzilla/data_preprocessing
outlier_detection.py
plots.py
protzilla/importing
fasta_import.py					14-18, 25-36
ms_data_import.py					122, 276
protzilla/methods
data_analysis.py					199, 304, 803, 806-813, 895-905, 963
data_preprocessing.py
protzilla/utilities
transform_dfs.py
ui/main
settings.py
ui/runs
fields.py
views.py					21, 250, 284
views_helper.py
ui/runs/forms
data_analysis.py					315-319, 376, 426-430, 465, 513, 1124-1165, 1247-1255, 1293, 1315
importing.py
Project Total

The report is truncated to 25 files out of 61. To see the full report, please visit the workflow summary page.

This report was generated by python-coverage-comment-action