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templates_ind, whitening_mat, whitening_mat_inv in "_kilosort_additional_files" #228

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Merged
esutlie merged 1 commit into from
Dec 10, 2025
Merged

templates_ind, whitening_mat, whitening_mat_inv in "_kilosort_additional_files" #228

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10 changes: 5 additions & 5 deletions element_array_ephys/readers/kilosort.py
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Original file line number Diff line number Diff line change
Expand Up @@ -5,7 +5,7 @@
import numpy as np
import re
import logging
from .utils import convert_to_number
from element_array_ephys.readers.utils import convert_to_number

log = logging.getLogger(__name__)

Expand All @@ -22,9 +22,6 @@ class Kilosort:
"spike_templates.npy",
"spike_times.npy",
"templates.npy",
"templates_ind.npy",
"whitening_mat.npy",
"whitening_mat_inv.npy",
"spike_clusters.npy",
]

Expand All @@ -35,6 +32,9 @@ class Kilosort:
"cluster_KSLabel.tsv",
"template_features.npy",
"template_feature_ind.npy",
"templates_ind.npy",
"whitening_mat.npy",
"whitening_mat_inv.npy",
]

kilosort_files = _kilosort_core_files + _kilosort_additional_files
Expand All @@ -47,7 +47,7 @@ def __init__(self, kilosort_dir):

self.validate()

params_filepath = kilosort_dir / "params.py"
params_filepath = self._kilosort_dir / "params.py"
self._info = {
"time_created": datetime.fromtimestamp(params_filepath.stat().st_ctime),
"time_modified": datetime.fromtimestamp(params_filepath.stat().st_mtime),
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