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FAIM

Facility for Advanced Imaging and Microscopy at FMI Basel

16 followers
Switzerland

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fmi-ij2-plugins fmi-ij2-plugins Public

A collection of ImageJ2 plugins for use with KNIME

Java 8 3
visiview-scripts visiview-scripts Public

A collection of macros for the VisiView acquisition software

Python 1 1
imagej-scripts imagej-scripts Public

Python 1

Repositories

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All Batchfile Bikeshed HTML Java Jinja Jupyter Notebook Python Rust Shell

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Showing 10 of 69 repositories

ome2xarray Public

fmi-faim/ome2xarray’s past year of commit activity

Python 0 BSD-3-Clause 0 0 0 Updated Jan 8, 2026
robocopy-command-builder Public

fmi-faim/robocopy-command-builder’s past year of commit activity

0 BSD-3-Clause 0 0 0 Updated Jan 7, 2026
faim-wako-searchfirst Public
Python scripts for the SearchFirst option in Wako Software Suite

fmi-faim/faim-wako-searchfirst’s past year of commit activity

Python 2 MIT 1 8 3 Updated Jan 6, 2026
ipa-project-template Public
Copier template for image processing & analysis projects.

fmi-faim/ipa-project-template’s past year of commit activity

Jinja 7 MIT 3 6 (1 issue needs help) 1 Updated Jan 5, 2026
example-project Public

fmi-faim/example-project’s past year of commit activity

Jupyter Notebook 2 BSD-3-Clause 0 0 1 Updated Jan 5, 2026
faim-ipa Public
A collection of Image Processing and Analysis (IPA) functions used at the Facility for Advanced Imaging and Microscopy (FAIM)

fmi-faim/faim-ipa’s past year of commit activity

Python 18 BSD-3-Clause 8 20 2 Updated Jan 5, 2026
metamorph-mda-parser Public
Light-weight parsing of Metamorph/VisiView Multi Dimensional Acquisition .nd files.

fmi-faim/metamorph-mda-parser’s past year of commit activity

Python 0 BSD-3-Clause 0 3 0 Updated Jan 2, 2026
cellvoyager-types Public
Pydantic models for CellVoyager CV7000/CV8000 metadata

fmi-faim/cellvoyager-types’s past year of commit activity

Python 1 BSD-3-Clause 2 1 1 Updated Jan 2, 2026
napari-save-transformed Public
Save image layers with their transformation applied

fmi-faim/napari-save-transformed’s past year of commit activity

Python 3 BSD-3-Clause 0 2 1 Updated Dec 29, 2025
faim-tablespy Public

fmi-faim/faim-tablespy’s past year of commit activity

Python 0 0 0 0 Updated Dec 12, 2025

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