Popular repositories Loading

1. rnaseq_pipeline rnaseq_pipeline Public

   `rnaseq_pipeline` is a reproducible, end-to-end bulk RNA-seq workflow that takes you from raw FASTQ files to publication-ready results

   Shell

2. Pathway-Builder Pathway-Builder Public

   Weighted pathway scoring for bulk and single‑cell RNA‑seq. Uses a simple CSV pathway schema (gene_symbol…weight), supports sample info for conditions, and outputs tidy CSVs + PDF comparisons (means…

   Python

3. Myofusion-index Myofusion-index Public

   Myofusion Automated: a reproducible pipeline to compute myotube fusion index from C2C12 IF images. Batch loads, segments myosin-positive myotubes, counts DAPI nuclei, and exports QC overlays + CSVs…

   Jupyter Notebook