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@harvardinformatics

Harvard Informatics

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  1. learning-bioinformatics-at-home learning-bioinformatics-at-home Public

    resources for learning bioinformatics

    1.3k 236

  2. JAuth JAuth Public

    Java GUI client to generate Google authentication codes

    Java 203 51

  3. bioinformatics-coffee-hour bioinformatics-coffee-hour Public

    Short lessons from FAS Informatics coffee hour

    HTML 154 50

  4. ATAC-seq ATAC-seq Public

    Python 145 43

  5. snpArcher snpArcher Public

    Snakemake workflow for highly parallel variant calling designed for ease-of-use in non-model organisms.

    Python 87 33

  6. GenomeAnnotation GenomeAnnotation Public

    Best practices and workflow for genome annotation

    Python 79 14

Repositories

Showing 10 of 179 repositories
  • ifxvue Public

    Harvard FAS Informatics Vue JS components

    harvardinformatics/ifxvue’s past year of commit activity
    Vue 0 GPL-2.0 0 0 10 Updated Jan 26, 2026
  • snpArcher Public

    Snakemake workflow for highly parallel variant calling designed for ease-of-use in non-model organisms.

    harvardinformatics/snpArcher’s past year of commit activity
    Python 87 MIT 33 24 2 Updated Jan 26, 2026
  • short-trainings Public

    Material for our various standalone short trainings (a potpourri, if you will)

    harvardinformatics/short-trainings’s past year of commit activity
    HTML 0 0 0 0 Updated Jan 23, 2026
  • informatics-website Public

    FAS Informatics website

    harvardinformatics/informatics-website’s past year of commit activity
    TeX 2 MIT 2 1 0 Updated Jan 20, 2026
  • ifxbilling Public

    Billing code for ifxapps

    harvardinformatics/ifxbilling’s past year of commit activity
    Python 0 GPL-2.0 0 0 0 Updated Jan 12, 2026
  • AllAsia-Symbiota Public Forked from Symbiota/Symbiota

    The Symbiota Virtual Flora/Fauna project is an open source software project, with central goal of developing on-line tools that aid in the generation, exploration and management of biodiversity data (collection specimens, observations, images, checklist, keys, etc.). See also: http://bdj.pensoft.net/articles.php?id=1114 and http://symbiota.org/

    harvardinformatics/AllAsia-Symbiota’s past year of commit activity
    JavaScript 0 GPL-2.0 104 0 0 Updated Jan 8, 2026
  • cactus-snakemake Public

    Snakemake workflows for performing whole genome alignment with Cactus efficiently on SLURM clusters

    harvardinformatics/cactus-snakemake’s past year of commit activity
    Python 7 MIT 2 3 0 Updated Jan 6, 2026
  • scRNAseq-preprocessing Public

    Documentation of and code for analyses performed to assess the effect of different methods for cleanup and pre-processing of raw scRNAseq data on downtream analyses.

    harvardinformatics/scRNAseq-preprocessing’s past year of commit activity
    R 0 MIT 1 0 0 Updated Dec 19, 2025
  • specify_web Public

    Conversion of HUH specify_web application to git

    harvardinformatics/specify_web’s past year of commit activity
    PHP 3 0 0 0 Updated Dec 19, 2025
  • bauer_static Public

    static page for bauer

    harvardinformatics/bauer_static’s past year of commit activity
    0 0 0 0 Updated Dec 18, 2025
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