FConverter

File format converter for FImpute2

Running FConverter

usage : FConverter <vcf2fimpute|snpID|fimpute2vcf> [options]
	help | -h
		print this help and exit the program
	-v
		print the program version
	vcf2fimpute
		vcf=[file]          gzip compressed vcf file 
		chip=[integer]      chip number
		[-p]                print file header
		[nthr=xx]           use xx threads (default=4)
	snpID
		hd=[file]           gzip compressed vcf file
		[ld=[file]]         gzip compressed vcf file (comma separated if many)
	fimpute2vcf
		gen=[file]          imputed genotypes file 
		snp=[file]          snp info file reported by FImpute 
		vcf=[file]          gzip compressed vcf file (reference) (comma separated if many)
		out=[string]        output file prefix
		chip=[integer]      chip number (0 for a VCF with all chips)