shinyDSP is a Shiny app that lets you interactively visualize Nanostring GeoMx data. Its outputs are highly customizable. It performs differential gene expression analysis and summarizes the results in tables and plots. Please refer to the vignette for details.
shinyDSP is available on Bioconductor and can be installed with the following:
if (!requireNamespace("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("shinyDSP")
# To install the development version from Github:
if (!requireNamespace("devtools", quietly = TRUE))
install.packages("devtools")
devtools::install_github("kimsjune/shinyDSP")library(shinyDSP)
app <- shinyDSP()
if (interactive()) shiny::runApp(app)