v0.8.0

v0.8.0

• Fixed read_allpeptides_txt() to be fine with NaNs in min and max scan number
• Bumped pyarrow version to 19.0.1
• Keep all modseq mode for ProSIMSIt (#31)

v0.7.0

v0.7.0

• Add option to parallelize across precursor bins
• Switch timezone to local time for logging
• Fix GUI build

v0.6.5

v0.6.5

• Replace np.NaN with np.nan for pandas 2.0 compatibility

fix/gui-build: Fix/gui build (#29)

Switch to miniconda and use clean build environment instead of conda_environment.yml

v0.6.4

v0.6.4

• Update pyarrow dependency to >=16.0

v0.6.3

v0.6.3

• Add total_jobs to JobPools
• Decrease subprocess logging level to DEBUG
• Fix unit tests

v0.6.2

v0.6.2

• Update job-pool to v0.3.0
• Added scaffold for readthedocs documentation
• Cleaned up test_maxquant.py and test_utils.py; added test for fill_missing_min_max_scans
• Added fill_missing_min_max_scans function for allpeptides.txt
• Fixed statistics output if skip_evidence == True
• Proper type hinting and some more docstrings
• Added missing parameters to docstrings

v0.6.1

v0.6.1

• Fix missing tmt_ms_level argument for tmt_requantify

v0.6.0

• Add cache folder option to reuse previously generated results from a different SIMSI run (#27)
• Memory and runtime optimizations (#26)
• Hotfix for NaN handling in evidence assembly
• Added "Potential contaminant" column in SIMSI output based on the "Proteins" column
• Added sorting step to prevent rare event of incorrect probability strings
• Added validation option for mzml conversion
• Improved raw file converter interface
• Removing importlib dependency from poetry
• Improved SIMSI version retrieval for logger
• Added sorting of raw files to prevent downstream problems

v0.5.0

• New GUI! Now it supports all parameters usually needed
• Added optional filter for maximum Posterior Error Probability considered for transfers