Skip to content
View kylegontjes's full-sized avatar
4 followers · 1 following

Highlights

  • Pro

Organizations

@Snitkin-Lab-Umich

Block or report kylegontjes

Block user

Prevent this user from interacting with your repositories and sending you notifications. Learn more about blocking users.

You must be logged in to block users.

Maximum 250 characters. Please don't include any personal information such as legal names or email addresses. Markdown supported. This note will be visible to only you.
Report abuse

Contact GitHub support about this user’s behavior. Learn more about reporting abuse.

Report abuse
kylegontjes/README.md
  • 👋 Hi, I’m @kylegontjes
  • 👀 I’m interested in antibacterial resistance, genomic epidemiology, comparative genomics, phylogenetics, and evolution.
  • 🌱 I’m proficient in: R, linux, and SAS
  • 🌱 I'm learning: python
  • 📫 How to reach me: kgontjes@umich.edu
  • ✏️ A collection of useful code snippets: https://gist.github.com/kylegontjes

GitHub contributions

GitHub Streak

Your GitHub stats

Pinned Loading

  1. CoverageStats CoverageStats Public

    Calculate coverage statistics after mapping short-read sequenced isolates to a reference sequence

    Python

  2. GeneScreener GeneScreener Public

    Snakemake to quickly screen gene presence in genes

    Python

  3. ISScreener ISScreener Public

    Runs insertion sequence detection workflow on Illumina WGS data

    Python

  4. phyloAMR phyloAMR Public

    Toolkit to perform phylogenetically-informed analysis of antibiotic resistance and other genome-influenced traits

    R 2 1