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Pull requests: loculus-project/loculus

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Pull requests list

feat!(prepro, config): add diamond as a segment assignment option to p… …repro backend related to the loculus backend component config Configuration related issues, i.e. helm processing deployment Code changes targetting the deployment infrastructure preprocessing Issues related to the preprocessing component
#5838 opened Jan 15, 2026 by anna-parker • Draft
3 tasks
chore(deps-dev): bump the minorandpatch group in /integration-tests with 4 updates dependencies Pull requests that update a dependency file javascript Pull requests that update Javascript code
#5835 opened Jan 14, 2026 by dependabot bot Loading…
chore(deps): bump astro from 5.16.8 to 5.16.9 in /docs in the minorandpatch group dependencies Pull requests that update a dependency file javascript Pull requests that update Javascript code
#5834 opened Jan 14, 2026 by dependabot bot Loading…
wip preview Triggers a deployment to argocd
#5831 opened Jan 12, 2026 by theosanderson • Draft
3 tasks
refactor(integration-tests): remove unused methods
#5830 opened Jan 11, 2026 by chaoran-chen Loading…
4
chore(kubernetes): update to SILO 0.9 and LAPIS 0.6 preview Triggers a deployment to argocd
#5814 opened Jan 8, 2026 by fengelniederhammer • Draft
3 tasks done
2
@fengelniederhammer
chore(deps): bump the minor group across 1 directory with 4 updates dependencies Pull requests that update a dependency file java Pull requests that update Java code
#5812 opened Jan 7, 2026 by dependabot bot Loading…
chore(deps-dev): bump the minor group across 1 directory with 6 updates dependencies Pull requests that update a dependency file javascript Pull requests that update Javascript code
#5811 opened Jan 7, 2026 by dependabot bot Loading…
chore(deps): bump dtolnay/rust-toolchain from 1.92 to 1.100 dependencies Pull requests that update a dependency file github_actions Pull requests that update GitHub Actions code
#5808 opened Jan 7, 2026 by dependabot bot Loading…
Helm output update_helm_output
#5807 opened Jan 7, 2026 by theosanderson • Draft
3 tasks
1
feat!(config, website): flip config and website to segment-reference structure preview Triggers a deployment to argocd
#5799 opened Jan 5, 2026 by anna-parker • Draft
4 tasks
1
7
test(website): Add vitest unit tests for sequence details modal
#5789 opened Jan 3, 2026 by Copilot AI • Draft
3 tasks done
2
@corneliusroemer
chore: add GitHub Copilot instructions
#5787 opened Jan 3, 2026 by Copilot AI • Draft
3 tasks done
1
@corneliusroemer
feat(integration-tests): optimize integration tests by using bulk submission
#5785 opened Jan 3, 2026 by Copilot AI • Draft
2 of 3 tasks
1
@corneliusroemer
Make silo replicas configurable and add PDBs for HA
#5774 opened Dec 26, 2025 by google-labs-jules bot • Draft
1
fix(deployment): Use SHA256 digests and mirror all external images to GHCR update_db_schema
#5772 opened Dec 19, 2025 by Copilot AI • Draft
3 tasks done
1
@corneliusroemer
15
feat(deposition): use zstd download and orjsonl for released entries
#5768 opened Dec 19, 2025 by google-labs-jules bot • Draft
7
feat(backend, deposition): add a deposition status to the backend and use to filter get-released-data prior to streaming update_db_schema
#5767 opened Dec 19, 2025 by anna-parker Loading…
3 tasks done
1
feat(silo-import): use orjsonl to parse ndjson, only check pipeline version of first record
#5764 opened Dec 19, 2025 by anna-parker Loading…
3 tasks done
1
9
feat(website): add diff view for comparing sequence versions preview Triggers a deployment to argocd
#5760 opened Dec 18, 2025 by corneliusroemer • Draft
5 of 8 tasks
1
chore(deps): bump react-dom and @types/react-dom in /keycloak/keycloakify dependencies Pull requests that update a dependency file javascript Pull requests that update Javascript code
#5747 opened Dec 17, 2025 by dependabot bot Loading…
1
chore(deps): bump the minorandpatch group in /ingest with 8 updates conda Pull requests that update conda code dependencies Pull requests that update a dependency file
#5740 opened Dec 17, 2025 by dependabot bot Loading…
Feature/spring boot 4 experimental
#5736 opened Dec 17, 2025 by corneliusroemer • Draft
3 tasks
2
3
demo: mock ena, deposition api, deposition UI preview Triggers a deployment to argocd
#5728 opened Dec 16, 2025 by theosanderson • Draft
3
chore(deps): bump zod from 3.25.76 to 4.2.0 in /website dependencies Pull requests that update a dependency file javascript Pull requests that update Javascript code
#5721 opened Dec 15, 2025 by dependabot bot Loading…
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