Update syntax for most modules

[marc-jones]

luslab-nf-modules

Thank you for contributing and submitting a pull request!

Please check you have done the following:

Uniform coding style

• Used snake_case rather than camelCase
• Followed the output channel naming convention (e.g. bam for BAM files, bed for BED files)
• Set the resource label for a new process

Continuous integration

• Added any new modules to .github/workflows/modules-testing.yml
• Added any new containers to .github/workflows/docker-build-push.yml and .github/workflows/docker-linting.yml
• Added any new workflows to .github/workflows/workflow-testing.yml
• Added any new test data to test_data
• Bumped the version when changing an existing module
  • Major.Minor.Patch
    • Major for breaking changes
    • Minor for feature updates and most things
    • Patch for bug fixes and small things like comment and variable name updates

Review

• Selected some reviewers
• Assigned yourself to the PR
• Tagged the PR appropriately