MetaCompass code with major updates

Updates

• New reference selection step
• Gzipped fastq reads accepted as input #13
• Assembly and mapping statistics

Fixes

• Metaphyler removed from reference selection step.
• MetaCompass can be restarted from failed/unfinished run
• #11 --unlock and --nolock available

MetaCompass version for bioRxiv

MetaCompass version for bioRxiv with minor updates

Fixes

• URLs to markers.tar.gz and refseq.tar.gz updated

MetaCompass version for bioRxiv

Version used to generate bioRxiv results

Fixes

• metacompass not skipping reference_recruitment when reference is provided (Issue #1)
• tidy up output directory (Issue #2)

MetaCompass version for paper

version used to generate paper results