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Bump the python-requirements group across 1 directory with 12 updates #19

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Bumps the python-requirements group with 12 updates in the /envs directory:

Package From To
simpleitk 2.5.0 2.5.2
coverage 7.8.2 7.10.0
jupyterlab 4.4.3 4.4.5
monai 1.4.0 1.5.0
pandas 2.2.3 2.3.1
plotly 6.1.2 6.2.0
pytest-cov 6.1.1 6.2.1
pytest 8.3.5 8.4.1
rich 14.0.0 14.1.0
ruff 0.11.12 0.12.5
timm 1.0.15 1.0.19
wandb 0.19.11 0.21.0

Updates simpleitk from 2.5.0 to 2.5.2

Release notes

Sourced from simpleitk's releases.

Release v2.5.2

To upgrade to this Python binary package run: pip install --upgrade --pre simpleitk --find-links https://github.com/SimpleITK/SimpleITK/releases/tag/v2.5.2

What's Changed

Full Changelog: SimpleITK/SimpleITK@v2.5.0...v2.5.2

Commits
  • 2018b6b Update version to 2.5.2
  • f4f47df Merge pull request #2319 from blowekamp/release_ITK_5_4_4
  • 392ab24 Update ITK Superbuild version to 5.4.4
  • a4c5c44 Merge pull request #2306 from blowekamp/fix_docker_as
  • 756b401 Fix Docker FromAsCasing error for Doxygen
  • 2f12793 Merge pull request #2294 from blowekamp/image_series_reader_options
  • ad34fae Add ForceOrthogonalDirection and ReverseOrder options
  • See full diff in compare view

Updates coverage from 7.8.2 to 7.10.0

Changelog

Sourced from coverage's changelog.

Version 7.10.0 — 2025-07-24

  • A new configuration option: ":ref:config_run_patch" specifies named patches to work around some limitations in coverage measurement. These patches are available:

    • patch = _exit lets coverage save its data even when :func:os._exit() <python:os._exit> is used to abruptly end the process. This closes long-standing issue 310_ as well as its duplicates: issue 312, issue 1673, issue 1845, and issue 1941.

    • patch = subprocess measures coverage in Python subprocesses created with :mod:subprocess, :func:os.system, or one of the :func:execv <python:os.execl> or :func:spawnv <python:os.spawnl> family of functions. Closes old issue 367_ and duplicate issue 378_.

    • patch = execv adjusts the :func:execv <python:os.execl> family of functions to save coverage data before ending the current program and starting the next. Not available on Windows. Closes issue 43_ after 15 years!

  • The HTML report now dimly colors subsequent lines in multi-line statements. They used to have no color. This gives a better indication of the amount of code missing in the report. Closes issue 1308_.

  • Two new exclusion patterns are part of the defaults: ... is automatically excluded as a line and if TYPE_CHECKING: is excluded as a branch. Closes issue 831_.

  • A new command-line option: --save-signal=USR1 specifies a signal that coverage.py will listen for. When the signal is sent, the coverage data will be saved. This makes it possible to save data from within long-running processes. Thanks, Arkady Gilinsky <pull 1998_>_.

  • A new configuration option: ":ref:config_report_partial_also" is a list of regexes to add as pragmas for partial branches. This parallels the ":ref:config_report_exclude_also" setting for adding line exclusion patterns.

  • A few file path configuration settings didn't allow for tilde expansion: :ref:config_json_output, :ref:config_lcov_output and :ref:config_run_debug_file. This is now fixed.

  • Wheels are included for 3.14 now that 3.14 rc1 is available.

  • We no longer ship a PyPy-specific wheel. PyPy will install the pure-Python wheel. Closes issue 2001_.

  • In the very unusual situation of not having a current frame, coverage no

... (truncated)

Commits
  • ef59be0 build: missed an expected distribution count
  • f49f061 docs: sample HTML for 7.10.0
  • 6a7d5ca docs: prep for 7.10.0
  • 395c8cd build: provide 3.14 wheels
  • 6154fda feat: patch=execv
  • 787e5c4 test: we don't use 'expensive' as a mark now
  • 7e49831 refactor: patch=_exit without a global
  • 4d4ddd8 fix: better ellipsis exclusion regex. #831
  • d578c52 fix: don't assume we have a current frame. #2005
  • ecf53d5 docs: remind myself what the cores are
  • Additional commits viewable in compare view

Updates jupyterlab from 4.4.3 to 4.4.5

Release notes

Sourced from jupyterlab's releases.

v4.4.5

4.4.5

(Full Changelog)

Bugs fixed

Maintenance and upkeep improvements

Documentation improvements

Contributors to this release

(GitHub contributors page for this release)

@​Darshan808 | @​github-actions | @​itsmevichu | @​jtpio | @​jupyterlab-probot | @​kr-2003 | @​krassowski | @​martinRenou | @​meeseeksmachine | @​nkn2022

v4.4.4

4.4.4

(Full Changelog)

Bugs fixed

Maintenance and upkeep improvements

... (truncated)

Commits
  • 71239d1 [ci skip] Publish 4.4.5
  • 5c433d7 Backport PR #17705: Fix scrollbar behaviour when scrolling past long cell in ...
  • ed7abfe Backport PR #17698: Update @codemirror/view to v6.38.1, fixing lineWrap...
  • 4f7e3c1 Backport PR #17693: Fix auto completion on irrelevant cell types (#17711)
  • f19dde2 Backport PR #17701: Do not change silently when executing an empty cell (#17710)
  • c1e374d Backport PR #17707: Reduce UI blocking time when saving large notebooks by us...
  • 76f1259 Backport PR #17703: Normalize ToolbarButtonComponent dataset attributes wit...
  • 0d0e214 Backport PR #17699: Bump brace-expansion from 1.1.11 to 1.1.12 (#17704)
  • f801d20 Backport PR #17591: Fixes for accessibility issues reported on missing ARIA r...
  • 8e240df Backport PR #17623: Documentation for Kernel Subshells (#17687)
  • Additional commits viewable in compare view

Updates monai from 1.4.0 to 1.5.0

Release notes

Sourced from monai's releases.

1.5.0

Added

  • Add platform-specific constraints to setup.cfg (#8260)
  • Add PythonicWorkflow (#8151)
  • Add SM architecture version check (#8199)
  • Add MedNext implementation (#8004)
  • Added a top button to CONSTRIBUTING.md (#8163)
  • Adding CODEOWNERS (#8457)
  • Restormer Implementation (#8312)
  • Add rectified flow noise scheduler for accelerated diffusion model (#8374)
  • Add prediction type for rflow scheduler (#8386)
  • Add Average Precision to metrics (#8089)
  • Implementation of a Masked Autoencoder for representation learning (#8152)
  • Implement TorchIO transforms wrapper analogous to TorchVision transfo… (#7579)
  • 8328 nnunet bundle integration (#8329)
  • Adding Support Policy + Doc Updates (#8458)
  • Classifier free guidance (#8460)

Fixed

  • Fix Ruff Numpy2 deprecation rules (#8179)
  • Fix torch.load() frequently warning in PersistentDataset and GDSDataset (#8177)
  • Fix the logging of a nested dictionary metric in MLflow (#8169)
  • Fix ImageFilter to allow Gaussian filter without filter_size (#8189)
  • Fix fold_constants, test_handler switched to onnx (#8211)
  • Fix TypeError in meshgrid (#8252)
  • Fix PatchMerging duplicate merging (#8285)
  • Fix test load image issue (#8297)
  • Fix bundle download error from ngc source (#8307)
  • Fix deprecated usage in zarr (#8313, #8477)
  • Fix DataFrame subsets indexing in CSVDataset() (#8351)
  • Fix packaging imports in version comparison logic (#8347)
  • Fix CommonKeys docstring (#8342)
  • Fix: correctly apply fftshift to real-valued data inputs (#8407)
  • Fix OptionalImportError: required package openslide is not installed (#8419)
  • Fix cosine noise scheduler (#8427)
  • Fix AutoencoderKL docstrings. (#8445)
  • Inverse Threading Fix (#8418)
  • Fix normalize intensity (#8286)
  • Fix path at test onnx trt export (#8361)
  • Fix broken urls (#8481, #8483)

Changed

  • [DOC] Update README.md (#8157)
  • Streamlined Rearrange in SpatialAttentionBlock (#8130)
  • Optimize VISTA3D (#8123)
  • Skip torch trt convert test with torch newer than or equal to 2.5.0 (#8165)
  • Enable redirection of all loggers by configuring a FileHandler within the bundle (#8142)
  • Apply pyupgrade fixes for Python 3.9+ syntax (#8150)
  • Update base image to 2410 (#8164)
  • TRT support for MAISI (#8153)

... (truncated)

Changelog

Sourced from monai's changelog.

[1.5.0] - 2025-06-13

What's Changed

Added

  • Add platform-specific constraints to setup.cfg (#8260)
  • Add PythonicWorkflow (#8151)
  • Add SM architecture version check (#8199)
  • Add MedNext implementation (#8004)
  • Added a top button to CONSTRIBUTING.md (#8163)
  • Adding CODEOWNERS (#8457)
  • Restormer Implementation (#8312)
  • Add rectified flow noise scheduler for accelerated diffusion model (#8374)
  • Add prediction type for rflow scheduler (#8386)
  • Add Average Precision to metrics (#8089)
  • Implementation of a Masked Autoencoder for representation learning (#8152)
  • Implement TorchIO transforms wrapper analogous to TorchVision transfo… (#7579)
  • 8328 nnunet bundle integration (#8329)
  • Adding Support Policy + Doc Updates (#8458)
  • Classifier free guidance (#8460)

Fixed

  • Fix Ruff Numpy2 deprecation rules (#8179)
  • Fix torch.load() frequently warning in PersistentDataset and GDSDataset (#8177)
  • Fix the logging of a nested dictionary metric in MLflow (#8169)
  • Fix ImageFilter to allow Gaussian filter without filter_size (#8189)
  • Fix fold_constants, test_handler switched to onnx (#8211)
  • Fix TypeError in meshgrid (#8252)
  • Fix PatchMerging duplicate merging (#8285)
  • Fix test load image issue (#8297)
  • Fix bundle download error from ngc source (#8307)
  • Fix deprecated usage in zarr (#8313, #8477)
  • Fix DataFrame subsets indexing in CSVDataset() (#8351)
  • Fix packaging imports in version comparison logic (#8347)
  • Fix CommonKeys docstring (#8342)
  • Fix: correctly apply fftshift to real-valued data inputs (#8407)
  • Fix OptionalImportError: required package openslide is not installed (#8419)
  • Fix cosine noise scheduler (#8427)
  • Fix AutoencoderKL docstrings. (#8445)
  • Inverse Threading Fix (#8418)
  • Fix normalize intensity (#8286)
  • Fix path at test onnx trt export (#8361)
  • Fix broken urls (#8481, #8483)

Changed

  • [DOC] Update README.md (#8157)
  • Streamlined Rearrange in SpatialAttentionBlock (#8130)
  • Optimize VISTA3D (#8123)
  • Skip torch trt convert test with torch newer than or equal to 2.5.0 (#8165)
  • Enable redirection of all loggers by configuring a FileHandler within the bundle (#8142)
  • Apply pyupgrade fixes for Python 3.9+ syntax (#8150)

... (truncated)

Commits

Updates pandas from 2.2.3 to 2.3.1

Release notes

Sourced from pandas's releases.

Pandas 2.3.1

We are pleased to announce the release of pandas 2.3.1. This release includes some improvements and fixes to the future string data type (preview feature for the upcoming pandas 3.0). We recommend that all users upgrade to this version.

See the full whatsnew for a list of all the changes. Pandas 2.3.1 supports Python 3.9 and higher.

The release will be available on the conda-forge channel:

conda install pandas --channel conda-forge

Or via PyPI:

python3 -m pip install --upgrade pandas

Please report any issues with the release on the pandas issue tracker.

Thanks to all the contributors who made this release possible.

Pandas 2.3.0

We are pleased to announce the release of pandas 2.3.0. This release includes some new features, bug fixes, and performance improvements. We recommend that all users upgrade to this version.

See the full whatsnew for a list of all the changes. Pandas 2.3.0 supports Python 3.10 and higher.

The release will be available on the defaults and conda-forge channels:

conda install -c conda-forge pandas

Or via PyPI:

python3 -m pip install --upgrade pandas

Please report any issues with the release on the pandas issue tracker.

Thanks to all the contributors who made this release possible.

Commits
  • c888af6 RLS: 2.3.1
  • 6aea302 Backport PR #61794 on branch 2.3.x (DOC: prepare 2.3.1 whatsnew notes for rel...
  • a160ae6 [backport 2.3.x] BUG[string]: incorrect index downcast in DataFrame.join (#61...
  • cf5db68 [backport 2.3.x] TST: update expected dtype for sum of decimals with pyarrow ...
  • 50ad136 Backport PR #61795 on branch 2.3.x (DOC: add section about upcoming pandas 3....
  • 6c762f3 Backport PR #61770 on branch 2.3.x (BUG: Fix unpickling of string dtypes of l...
  • fd99ef7 Backport PR #61705 on branch 2.3.x (DOC: add pandas 3.0 migration guide for t...
  • 4e5237d [backport 2.3.x] CI: clean up wheel build workarounds now that Cython 3.1.0 i...
  • 4d42cd8 Revert "[2.3.x] DEPS: Drop Python 3.9 (#60792)" (#61755)
  • 5d32ae9 BLD: Build wheels for 3.9 and musllinux-aarch64 for pandas 2.3 (#61569)
  • Additional commits viewable in compare view

Updates plotly from 6.1.2 to 6.2.0

Release notes

Sourced from plotly's releases.

v6.2.0

Added

  • Add SRI (Subresource Integrity) hash support for CDN script tags when using include_plotlyjs='cdn'. This enhances security by ensuring browser verification of CDN-served plotly.js files [#5165] (with thanks to @​ddworken)

Fixed

  • Allow setting Plotly.js path via pio.defaults [#5207]

Changed

  • Refactor validation code to reduce bundle size [#5214] (with thanks to @​bmaranville)
  • Add deprecation warnings when using Kaleido v0 or deprecated image export features [#5177]
Changelog

Sourced from plotly's changelog.

[6.2.0] - 2025-06-26

Added

  • Add SRI (Subresource Integrity) hash support for CDN script tags when using include_plotlyjs='cdn'. This enhances security by ensuring browser verification of CDN-served plotly.js files [#5165] (with thanks to @​ddworken)

Fixed

  • Allow setting Plotly.js path via pio.defaults [#5207]

Changed

  • Refactor validation code to reduce bundle size [#5214] (with thanks to @​bmaranville)
  • Add deprecation warnings when using Kaleido v0 or deprecated image export features [#5177]
Commits

Updates pytest-cov from 6.1.1 to 6.2.1

Changelog

Sourced from pytest-cov's changelog.

6.2.1 (2025-06-12)

  • Added a version requirement for pytest's pluggy dependency (1.2.0, released 2023-06-21) that has the required new-style hookwrapper API.

  • Removed deprecated license classifier (packaging).

  • Disabled coverage warnings in two more situations where they have no value:

    • "module-not-measured" in workers
    • "already-imported" in subprocesses

6.2.0 (2025-06-11)

  • The plugin now adds 3 rules in the filter warnings configuration to prevent common coverage warnings being raised as obscure errors::

    default:unclosed database in <sqlite3.Connection object at:ResourceWarning once::PytestCovWarning once::CoverageWarning

    This fixes most of the bad interactions that are occurring on pytest 8.4 with filterwarnings=error.

    The plugin will check if there already matching rules for the 3 categories (ResourceWarning, PytestCovWarning, CoverageWarning) and message (unclosed database in <sqlite3.Connection object at) before adding the filters.

    This means you can have this in your pytest configuration for complete oblivion (not recommended, if that is not clear)::

    filterwarnings = [ "error", "ignore:unclosed database in <sqlite3.Connection object at:ResourceWarning", "ignore::PytestCovWarning", "ignore::CoverageWarning", ]

Commits
  • 55dbe43 Bump version: 6.2.0 → 6.2.1
  • d17e9b7 Update changelog.
  • 8964ab7 Add a note for this warning disable.
  • e932e41 Prevent unimported warnings @ pytest-xdist workers
  • 573379b Bring pytest-cov's suprocess management in line with coverage's process_start...
  • f1884e8 Fix xdist pin.
  • 512c669 Added minium version requirements for pluggin (for new-style hookwrappers). P...
  • 629ba64 Remove deprecated license classifier.
  • dca5723 Bump version: 6.1.1 → 6.2.0
  • f69166a Also trigger the sqlite warning.
  • Additional commits viewable in compare view

Updates pytest from 8.3.5 to 8.4.1

Release notes

Sourced from pytest's releases.

8.4.1

pytest 8.4.1 (2025-06-17)

Bug fixes

  • #13461: Corrected _pytest.terminal.TerminalReporter.isatty to support being called as a method. Before it was just a boolean which could break correct code when using -o log_cli=true).

  • #13477: Reintroduced pytest.PytestReturnNotNoneWarning{.interpreted-text role="class"} which was removed by accident in pytest [8.4]{.title-ref}.

    This warning is raised when a test functions returns a value other than None, which is often a mistake made by beginners.

    See return-not-none{.interpreted-text role="ref"} for more information.

  • #13497: Fixed compatibility with Twisted 25+.

Improved documentation

  • #13492: Fixed outdated warning about faulthandler not working on Windows.

8.4.0

pytest 8.4.0 (2025-06-02)

Removals and backward incompatible breaking changes

  • #11372: Async tests will now fail, instead of warning+skipping, if you don't have any suitable plugin installed.

  • #12346: Tests will now fail, instead of raising a warning, if they return any value other than None.

  • #12874: We dropped support for Python 3.8 following its end of life (2024-10-07).

  • #12960: Test functions containing a yield now cause an explicit error. They have not been run since pytest 4.0, and were previously marked as an expected failure and deprecation warning.

    See the docs <yield tests deprecated>{.interpreted-text role="ref"} for more information.

Deprecations (removal in next major release)

  • #10839: Requesting an asynchronous fixture without a [pytest_fixture_setup]{.title-ref} hook that resolves it will now give a DeprecationWarning. This most commonly happens if a sync test requests an async fixture. This should have no effect on a majority of users with async tests or fixtures using async pytest plugins, but may affect non-standard hook setups or autouse=True. For guidance on how to work around this warning see sync-test-async-fixture{.interpreted-text role="ref"}.

New features

  • #11538: Added pytest.RaisesGroup{.interpreted-text role="class"} as an equivalent to pytest.raises{.interpreted-text role="func"} for expecting ExceptionGroup{.interpreted-text role="exc"}. Also adds pytest.RaisesExc{.interpreted-text role="class"} which is now the logic behind pytest.raises{.interpreted-text role="func"} and used as parameter to pytest.RaisesGroup{.interpreted-text role="class"}. RaisesGroup includes the ability to specify multiple different expected exceptions, the structure of nested exception groups, and flags for emulating except* <except_star>{.interpreted-text role="ref"}. See assert-matching-exception-groups{.interpreted-text role="ref"} and docstrings for more information.

  • #12081: Added capteesys{.interpreted-text role="fixture"} to capture AND pass output to next handler set by --capture=.

  • #12504: pytest.mark.xfail{.interpreted-text role="func"} now accepts pytest.RaisesGroup{.interpreted-text role="class"} for the raises parameter when you expect an exception group. You can also pass a pytest.RaisesExc{.interpreted-text role="class"} if you e.g. want to make use of the check parameter.

  • #12713: New [--force-short-summary]{.title-ref} option to force condensed summary output regardless of verbosity level.

... (truncated)

Commits

Updates rich from 14.0.0 to 14.1.0

Release notes

Sourced from rich's releases.

The Lively Release

Live objects may now be nested. Previously a progress bar inside another progress context would fail. See the changelog below for this and other changes.

[14.1.0] - 2025-06-25

Changed

Fixed

Added

  • Added TTY_INTERACTIVE environment variable to force interactive mode off or on Textualize/rich#3777
Changelog

Sourced from rich's changelog.

[14.1.0] - 2025-06-25

Changed

Fixed

Added

  • Added TTY_INTERACTIVE environment variable to force interactive mode off or on Textualize/rich#3777
Commits

Updates ruff from 0.11.12 to 0.12.5

Release notes

Sourced from ruff's releases.

0.12.5

Release Notes

Preview features

  • [flake8-use-pathlib] Add autofix for PTH101, PTH104, PTH105, PTH121 (#19404)
  • [ruff] Support byte strings (RUF055) (#18926)

Bug fixes

  • Fix unreachable panic in parser (#19183)
  • [flake8-pyi] Skip fix if all Union members are None (PYI016) (#19416)
  • [perflint] Parenthesize generator expressions (PERF401) (#19325)
  • [pylint] Handle empty comments after line continuation (PLR2044) (#19405)

Rule changes

  • [pep8-naming] Fix N802 false positives for CGIHTTPRequestHandler and SimpleHTTPRequestHandler (#19432)

Contributors

Install ruff 0.12.5

Install prebuilt binaries via shell script

curl --proto '=https' --tlsv1.2 -LsSf https://github.com/astral-sh/ruff/releases/download/0.12.5/ruff-installer.sh | sh

Install prebuilt binaries via powershell script

... (truncated)

Changelog

Sourced from ruff's changelog.

0.12.5

Preview features

  • [Description has been truncated

@dependabot
Bump the python-requirements group across 1 directory with 12 updates
b9efcc9 
Bumps the python-requirements group with 12 updates in the /envs directory:

| Package | From | To |
| --- | --- | --- |
| [simpleitk](https://github.com/SimpleITK/SimpleITK) | `2.5.0` | `2.5.2` |
| [coverage](https://github.com/nedbat/coveragepy) | `7.8.2` | `7.10.0` |
| [jupyterlab](https://github.com/jupyterlab/jupyterlab) | `4.4.3` | `4.4.5` |
| [monai](https://github.com/Project-MONAI/MONAI) | `1.4.0` | `1.5.0` |
| [pandas](https://github.com/pandas-dev/pandas) | `2.2.3` | `2.3.1` |
| [plotly](https://github.com/plotly/plotly.py) | `6.1.2` | `6.2.0` |
| [pytest-cov](https://github.com/pytest-dev/pytest-cov) | `6.1.1` | `6.2.1` |
| [pytest](https://github.com/pytest-dev/pytest) | `8.3.5` | `8.4.1` |
| [rich](https://github.com/Textualize/rich) | `14.0.0` | `14.1.0` |
| [ruff](https://github.com/astral-sh/ruff) | `0.11.12` | `0.12.5` |
| [timm](https://github.com/huggingface/pytorch-image-models) | `1.0.15` | `1.0.19` |
| [wandb](https://github.com/wandb/wandb) | `0.19.11` | `0.21.0` |



Updates `simpleitk` from 2.5.0 to 2.5.2
- [Release notes](https://github.com/SimpleITK/SimpleITK/releases)
- [Commits](SimpleITK/SimpleITK@v2.5.0...v2.5.2)

Updates `coverage` from 7.8.2 to 7.10.0
- [Release notes](https://github.com/nedbat/coveragepy/releases)
- [Changelog](https://github.com/nedbat/coveragepy/blob/master/CHANGES.rst)
- [Commits](coveragepy/coveragepy@7.8.2...7.10.0)

Updates `jupyterlab` from 4.4.3 to 4.4.5
- [Release notes](https://github.com/jupyterlab/jupyterlab/releases)
- [Changelog](https://github.com/jupyterlab/jupyterlab/blob/main/RELEASE.md)
- [Commits](https://github.com/jupyterlab/jupyterlab/compare/@jupyterlab/lsp@4.4.3...@jupyterlab/lsp@4.4.5)

Updates `monai` from 1.4.0 to 1.5.0
- [Release notes](https://github.com/Project-MONAI/MONAI/releases)
- [Changelog](https://github.com/Project-MONAI/MONAI/blob/dev/CHANGELOG.md)
- [Commits](Project-MONAI/MONAI@1.4.0...1.5.0)

Updates `pandas` from 2.2.3 to 2.3.1
- [Release notes](https://github.com/pandas-dev/pandas/releases)
- [Commits](pandas-dev/pandas@v2.2.3...v2.3.1)

Updates `plotly` from 6.1.2 to 6.2.0
- [Release notes](https://github.com/plotly/plotly.py/releases)
- [Changelog](https://github.com/plotly/plotly.py/blob/main/CHANGELOG.md)
- [Commits](plotly/plotly.py@v6.1.2...v6.2.0)

Updates `pytest-cov` from 6.1.1 to 6.2.1
- [Changelog](https://github.com/pytest-dev/pytest-cov/blob/master/CHANGELOG.rst)
- [Commits](pytest-dev/pytest-cov@v6.1.1...v6.2.1)

Updates `pytest` from 8.3.5 to 8.4.1
- [Release notes](https://github.com/pytest-dev/pytest/releases)
- [Changelog](https://github.com/pytest-dev/pytest/blob/main/CHANGELOG.rst)
- [Commits](pytest-dev/pytest@8.3.5...8.4.1)

Updates `rich` from 14.0.0 to 14.1.0
- [Release notes](https://github.com/Textualize/rich/releases)
- [Changelog](https://github.com/Textualize/rich/blob/master/CHANGELOG.md)
- [Commits](Textualize/rich@v14.0.0...v14.1.0)

Updates `ruff` from 0.11.12 to 0.12.5
- [Release notes](https://github.com/astral-sh/ruff/releases)
- [Changelog](https://github.com/astral-sh/ruff/blob/main/CHANGELOG.md)
- [Commits](astral-sh/ruff@0.11.12...0.12.5)

Updates `timm` from 1.0.15 to 1.0.19
- [Release notes](https://github.com/huggingface/pytorch-image-models/releases)
- [Commits](huggingface/pytorch-image-models@v1.0.15...v1.0.19)

Updates `wandb` from 0.19.11 to 0.21.0
- [Release notes](https://github.com/wandb/wandb/releases)
- [Changelog](https://github.com/wandb/wandb/blob/main/CHANGELOG.md)
- [Commits](wandb/wandb@v0.19.11...v0.21.0)

---
updated-dependencies:
- dependency-name: simpleitk
  dependency-version: 2.5.2
  dependency-type: direct:production
  update-type: version-update:semver-patch
  dependency-group: python-requirements
- dependency-name: coverage
  dependency-version: 7.10.0
  dependency-type: direct:production
  update-type: version-update:semver-minor
  dependency-group: python-requirements
- dependency-name: jupyterlab
  dependency-version: 4.4.5
  dependency-type: direct:production
  update-type: version-update:semver-patch
  dependency-group: python-requirements
- dependency-name: monai
  dependency-version: 1.5.0
  dependency-type: direct:production
  update-type: version-update:semver-minor
  dependency-group: python-requirements
- dependency-name: pandas
  dependency-version: 2.3.1
  dependency-type: direct:production
  update-type: version-update:semver-minor
  dependency-group: python-requirements
- dependency-name: plotly
  dependency-version: 6.2.0
  dependency-type: direct:production
  update-type: version-update:semver-minor
  dependency-group: python-requirements
- dependency-name: pytest-cov
  dependency-version: 6.2.1
  dependency-type: direct:production
  update-type: version-update:semver-minor
  dependency-group: python-requirements
- dependency-name: pytest
  dependency-version: 8.4.1
  dependency-type: direct:production
  update-type: version-update:semver-minor
  dependency-group: python-requirements
- dependency-name: rich
  dependency-version: 14.1.0
  dependency-type: direct:production
  update-type: version-update:semver-minor
  dependency-group: python-requirements
- dependency-name: ruff
  dependency-version: 0.12.5
  dependency-type: direct:production
  update-type: version-update:semver-minor
  dependency-group: python-requirements
- dependency-name: timm
  dependency-version: 1.0.19
  dependency-type: direct:production
  update-type: version-update:semver-patch
  dependency-group: python-requirements
- dependency-name: wandb
  dependency-version: 0.21.0
  dependency-type: direct:production
  update-type: version-update:semver-minor
  dependency-group: python-requirements
...

Signed-off-by: dependabot[bot] <support@github.com>
@dependabot dependabot bot added dependencies Pull requests that update a dependency file python Pull requests that update python code labels Jul 25, 2025
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dependabot bot commented on behalf of github Aug 6, 2025

Looks like these dependencies are updatable in another way, so this is no longer needed.

@dependabot dependabot bot closed this Aug 6, 2025
@dependabot dependabot bot deleted the dependabot/pip/envs/python-requirements-5f8aceec58 branch August 6, 2025 14:20
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