Assignment

.github/pull_request_template.md

@@ -10,8 +10,5 @@
 
 ## A reference to a related issue in your repository (if applicable)
 
-## @mentions of the person or team responsible for reviewing proposed changes (At least 2 people)
-- 
-
 ## Checklist
 - [ ] I can confirm that my changes are working as intended

.github/workflows/autograder.yml

@@ -0,0 +1,36 @@
+name: Assignment autograder
+on: 
+  pull_request:
+    branches:
+      - main
+    types: [opened, synchronize, reopened]
+jobs:
+  autograder:
+    name: Assignment autograder
+    if: startsWith(github.head_ref, 'assignment') && github.repository_owner != 'UofT-DSI'
+    runs-on: ubuntu-latest
+    steps:
+      - uses: actions/checkout@v4
+      - uses: astral-sh/setup-uv@v5
+      - name: Setup working directory for script
+        run: |
+          UUID=$(uuidgen)
+          echo "UUID=$UUID" >> $GITHUB_ENV
+          mkdir /tmp/$UUID
+          cp $GITHUB_WORKSPACE/02_activities/assignments/assignment.sh /tmp/$UUID
+      - name: Run assignment script
+        run: |
+          bash -c "bash assignment.sh 2>&1 | tee /tmp/${{ env.UUID }}_output.txt"
+        working-directory: /tmp/${{ env.UUID }}
+      - name: Grade responses
+        id: grade
+        env:
+          GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+          REPO_OWNER: ${{ github.repository_owner }}
+          REPO_NAME: ${{ github.event.repository.name }}
+          PR_NUMBER: ${{ github.event.pull_request.number }}
+          REPO_BRANCH: ${{ github.event.pull_request.head.ref }}
+          WORKING_DIR: /tmp/${{ env.UUID }}
+        run: |
+          wget -O /tmp/autograder.py https://github.com/UofT-DSI/shell/raw/refs/heads/main/03_instructional_team/autograder/autograder.py
+          uv run --python 3.12 --with pandas,tabulate,requests /tmp/autograder.py

.github/workflows/automatic_pr_comment.yaml

@@ -0,0 +1,48 @@
+name: UofT-DSI Main Repository PR Workflow
+
+on:
+  pull_request_target:
+    types: [opened, synchronize]
+
+jobs:
+  handle-pr:
+    if: github.repository_owner == 'UofT-DSI'
+    runs-on: ubuntu-latest
+    steps:
+      - name: Handle PR based on source branch
+        uses: actions/github-script@v6
+        with:
+          script: |
+            const pr = context.payload.pull_request;
+            const branchName = pr.head.ref;
+            const issue_number = pr.number;
+            const repo = context.repo;
+
+            if (branchName.startsWith('assignment')) {
+              const commentBody = `This pull request was made to the wrong repository. Please open it in your own fork instead. Refer to the [Assignment Submission Guide](https://github.com/UofT-DSI/onboarding/blob/main/onboarding_documents/submissions.md) for detailed instructions.`;
+
+              // Comment on the PR
+              await github.rest.issues.createComment({
+                owner: repo.owner,
+                repo: repo.repo,
+                issue_number: issue_number,
+                body: commentBody
+              });
+
+              // Close the PR
+              await github.rest.pulls.update({
+                owner: repo.owner,
+                repo: repo.repo,
+                pull_number: issue_number,
+                state: "closed"
+              });
+            } else {
+              const commentBody = `Thanks for your contribution! 🎉\n\nPlease remember to tag or request a review from the DSI team. Give us up to 72 hours to review your pull request. We appreciate your patience and efforts.`;
+
+              await github.rest.issues.createComment({
+                owner: repo.owner,
+                repo: repo.repo,
+                issue_number: issue_number,
+                body: commentBody
+              });
+            }

.github/workflows/deploy_github_pages.yml

@@ -0,0 +1,42 @@
+# Simple workflow for deploying static content to GitHub Pages
+name: Deploy static content to Pages
+
+on:
+  # Runs on pushes targeting the default branch
+  push:
+    branches: ["main"]
+
+  # Allows you to run this workflow manually from the Actions tab
+  workflow_dispatch:
+
+# Sets permissions of the GITHUB_TOKEN to allow deployment to GitHub Pages
+permissions:
+  contents: read
+  pages: write
+  id-token: write
+
+# Allow only one concurrent deployment, skipping runs queued between the run in-progress and latest queued.
+# However, do NOT cancel in-progress runs as we want to allow these production deployments to complete.
+concurrency:
+  group: "pages"
+  cancel-in-progress: false
+
+jobs:
+  # Single deploy job since we're just deploying
+  deploy:
+    environment:
+      name: github-pages
+      url: ${{ steps.deployment.outputs.page_url }}
+    runs-on: ubuntu-latest
+    steps:
+      - name: Checkout
+        uses: actions/checkout@v4
+      - name: Setup Pages
+        uses: actions/configure-pages@v5
+      - name: Upload artifact
+        uses: actions/upload-pages-artifact@v3
+        with:
+          path: './03_instructional_team/githubpages'
+      - name: Deploy to GitHub Pages
+        id: deployment
+        uses: actions/deploy-pages@v4

.gitignore

@@ -1,4 +1,19 @@
 .DS_Store
 .vscode/
-./04_instructional_team/lessons/pdf/*
-./04_instructional_team/lessons/html/*
+03_instructional_team/lessons/pdf/*
+03_instructional_team/lessons/html/*
+
+# local node modules
+node_modules/
+package-lock.json
+package.json
+
+### Running the assignment script unzips a large number of files into the tree
+# Ignore all files in shell/02_activities/assignments/
+02_activities/assignments/*
+
+# Un-ignore the specific files
+!02_activities/assignments/assignment.sh
+!02_activities/assignments/github_actions.png
+!02_activities/assignments/assignment_instructions.md
+

01_materials/bash_quick_reference.md

@@ -0,0 +1,108 @@
+# Bash Commands Reference
+
+## 📋 Commands Overview
+
+```bash
+$ echo Rachael
+Rachael
+
+$ conda activate dsi_participant
+(dsi_participant)
+
+$ date
+Tue, Nov 19, 2024 6:28:10PM
+
+$ asdkfjhgoipwhr
+Command not found
+
+$ man ls
+# Opens the manual for `ls`
+# To exit, press 'q'
+
+$ help
+# Lists available shell commands
+```
+
+---
+
+## 📁 File & Directory Navigation
+
+| Command                | Description                                                |
+|------------------------|------------------------------------------------------------|
+| `pwd`                 | Show current working directory                             |
+| `ls`                  | List folders & files in the working directory              |
+| `cd`                  | Move to home directory                                     |
+| `cd Desktop`          | Move into Desktop directory                                |
+| `cd <path>`           | Move into a specific path                                  |
+| `cd ..`               | Move one level up (parent directory)                       |
+
+---
+
+## 🛠 File & Directory Management
+
+| Command                             | Description                                         |
+|-------------------------------------|-----------------------------------------------------|
+| `mkdir <dir_name>`                 | Make new directories                                |
+| `touch <file_name>`               | Create a file                                       |
+| `rm <directory_name>`             | Remove a directory                                  |
+| `rm <file_name>`                  | Remove a file                                       |
+| `cp <source> <destination>`       | Copy file from source to destination                |
+| `cp <dir_source>/* <dir_dest>`    | Copy all files from source dir to destination dir   |
+| `mv <file1> <file2>`              | Rename/move file1 to file2                          |
+| `cat <file_name>`                 | Display content of the file                         |
+| `echo "text" > file.txt`          | Replace content in file with text                   |
+| `echo "text" >> file.txt`         | Append text to file                                 |
+
+---
+
+## ✏️ Editing Files
+
+| Command            | Description                        |
+|--------------------|------------------------------------|
+| `nano <file_name>` | Open file in nano text editor      |
+| `code <file_name>` | Open file in VS Code               |
+
+---
+
+## 🧰 Useful Options
+
+| Option | Description                                               |
+|--------|-----------------------------------------------------------|
+| `-i`   | Prompt before overwriting an existing file                |
+| `-r`   | Recursively copy directories and their contents           |
+| `-v`   | Show informative messages during operations               |
+| `-f`   | Force action (overrides `-i` if both are used together)   |
+
+---
+
+## 🔧 Hash-bang (Shebang)
+
+Place this at the top of every Bash script to indicate which shell to use:
+
+```bash
+#!/bin/bash
+```
+
+---
+
+## ⚙️ Optional extras for customizing bash
+#### Append to ~/.bash_profile for extra spacing between previous commands and the subsequent shell prompt**
+```
+export PS1="\n\n$PS1"
+```
+
+#### Append to ~/.bash_profile to track live command history
+```
+export PROMPT_COMMAND="history -a; $PROMPT_COMMAND"
+alias showhistory="clear; tail -n0 -F ~/.bash_history | nl"
+```
+* clear: clear the terminal
+* tail: command for displaying the last few lines of a file
+* -n0: display no lines currently in the file
+* -F: watch the file for changes and display any new lines
+* ~/.bash_history: command history file for bash
+* | nl: line numbering
+
+#### To display live updated command history, run this in a separate window:
+showhistory
+

02_activities/assignments/assignment.sh

@@ -0,0 +1,55 @@
+#!/bin/bash
+set -x
+
+############################################
+# DSI CONSULTING INC. Project setup script #
+############################################
+# This script creates standard analysis and output directories
+# for a new project. It also creates a README file with the
+# project name and a brief description of the project.
+# Then it unzips the raw data provided by the client.
+
+mkdir analysis output
+touch README.md
+touch analysis/main.py
+
+# download client data
+curl -Lo rawdata.zip https://github.com/UofT-DSI/shell/raw/refs/heads/main/02_activities/assignments/rawdata.zip
+unzip -q rawdata.zip
+
+###########################################
+# Complete assignment here
+
+# 1. Create a directory named data
+mkdir data
+
+# 2. Move the ./rawdata directory to ./data/raw
+mv ./rawdata ./data/raw
+
+# 3. List the contents of the ./data/raw directory
+ls data/raw
+
+# 4. In ./data/processed, create the following directories: server_logs, user_logs, and event_logs
+mkdir -p data/processed/{server_logs,user_logs,event_logs}
+
+# 5. Copy all server log files (files with "server" in the name AND a .log extension) from ./data/raw to ./data/processed/server_logs
+
+cp data/raw/*server*.log data/processed/server_logs/
+
+# 6. Repeat the above step for user logs and event logs
+cp data/raw/*user*.log data/processed/server_logs/
+cp data/raw/*event*.log data/processed/server_logs/
+
+# 7. For user privacy, remove all files containing IP addresses (files with "ipaddr" in the filename) from ./data/raw and ./data/processed/user_logs
+rm data/raw/*ipaddr*
+rm data/processed/user_logs/*ipaddr*
+
+# 8. Create a file named ./data/inventory.txt that lists all the files in the subfolders of ./data/processed
+find data/processed -type f > data/inventory.txt
+
+
+###########################################
+
+echo "Project setup is complete!"
+
+#amended