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First pass at mesh mapping #17

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First pass at mesh mapping #17

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@cmungall cmungall commented Jul 2, 2019

see #15

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cmungall commented Jul 2, 2019

First pass at mappings here: https://github.com/obophenotype/chiro/blob/d716b02b3d13e1354f220098af7489eb6a512bdd/src/ontology/mappings/mesh-chebi-role-mappings-unique.tsv

@cmungall cmungall requested a review from nicolevasilevsky July 2, 2019 00:59
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nicolevasilevsky commented Jul 2, 2019

It looks good for the most part - these mappings below are incorrect, I think.

ID Label ID Label
CHEBI:50751 anti-estrogen MESH:D020847 Estrogen Receptor Modulators
CHEBI:50683 dihydrofolate reductase inhibitor MESH:D005493 Folic Acid Antagonists
CHEBI:63951 estrogen receptor agonist MESH:D004967 Estrogens
MESH:D020847 Estrogen Receptor Modulators CHEBI:50751 anti-estrogen
CHEBI:35617 flavouring agent MESH:D005503 Food Additives
MESH:D005493 Folic Acid Antagonists CHEBI:50683 dihydrofolate reductase inhibitor
MESH:D005503 Food Additives CHEBI:35617 flavouring agent
CHEBI:50902 genotoxin MESH:D009153 Mutagens
CHEBI:53756 HIV-1 reverse transcriptase inhibitor MESH:D018894 Reverse Transcriptase Inhibitors
MESH:D006993 Hypnotics and Sedatives CHEBI:35717 sedative
CHEBI:24851 insect growth regulator MESH:D007605 Juvenile Hormones
MESH:D007605 Juvenile Hormones CHEBI:24851 insect growth regulator
MESH:D009153 Mutagens CHEBI:50902 genotoxin
MESH:D064729 Neurokinin-1 Receptor Antagonists CHEBI:55351 substance P receptor antagonist
CHEBI:60258 peptidase inhibitor MESH:D011480 Protease Inhibitors
MESH:D010937 Plant Growth Regulators CHEBI:37848 plant hormone
CHEBI:37848 plant hormone MESH:D010937 Plant Growth Regulators
MESH:D011480 Protease Inhibitors CHEBI:60258 peptidase inhibitor
MESH:D018894 Reverse Transcriptase Inhibitors CHEBI:53756 HIV-1 reverse transcriptase inhibitor
CHEBI:35717 sedative MESH:D006993 Hypnotics and Sedatives
CHEBI:5924 serine endopeptidase inhibitor MESH:D015842 Serine Proteinase Inhibitors
MESH:D015842 Serine Proteinase Inhibitors CHEBI:5924 serine endopeptidase inhibitor
CHEBI:55351 substance P receptor antagonist MESH:D064729 Neurokinin-1 Receptor Antagonists
MESH:D004967 Estrogens CHEBI:63951 estrogen receptor agonist

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See my comment - looks good for the most part

@cthoyt cthoyt mentioned this pull request Apr 21, 2020
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