Refactoring of lib.fileio.auto_open function to work with subprocess (#266) #267
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Reovirus
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removing the global definition of loggers to satisfy latest flake8 update
agalitsyna
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Apr 21, 2025
agalitsyna
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Comments from 26 May 2025 Open2C meeting. @golobor @agalitsyna @Phlya
Phlya
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May 26, 2025
…ngs example tested and vis improved.
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…ces updated, OSF download instead of obscure file name.
agalitsyna
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Jun 19, 2025
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Checked backwards compatibility on (1) sample distiller-nf, (2) tests, (3) example notebooks.
agalitsyna
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Jun 19, 2025
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Introduced the CommandFormatter interface, encapsulating file operations and validations.
Added standard CLI response outputs to enhance user interaction.
MODES_TO_FILES_PRESET: format keys with values as lists of possible operation modes (read, write, append).
COMMANDS: format and mode keys with values as dictionaries containing:
tool: the tool's presence is verified in the system.
command: a command formatted for substituting the number of available processors (nproc).
This structure streamlines adding new formats without altering existing code.
Added capabilities for handling binary files.
This feature is not currently utilized but provides flexibility for future enhancements.
Transitioned to using subprocess for file operations, improving compatibility and performance.
P.S. The function signatures and responses of auto_open remain unchanged, ensuring backward compatibility. However, the implementation using the CommandFormatter class offers a more convenient and versatile approach, enhancing code maintainability and scalability.