Skip to content

@StatFunGen StatFunGen

Change the repository type filter

All

    Repositories list

    13 repositories

    • statgen-primer

      Public
      Notes on the statistics background for statistical genetics trainees
      Jupyter Notebook
      •1•6•0•0•Updated Jan 16, 2026Jan 16, 2026

    • pecotmr

      Public
      Post-GWAS enrichment, colocalization, TWAS and Mendelian Randomization to integrate molecular QTL and GWAS.
      C++
      •
      Other
      •20•31•10•6•Updated Jan 13, 2026Jan 13, 2026

    • xqtl-paper

      Public
      FunGen-xQTL phase 1 manuscript
      Jupyter Notebook
      •
      MIT License
      •10•2•0•1•Updated Jan 12, 2026Jan 12, 2026

    • colocboost

      Public
      R package implementing multi-context colocalization analysis method for molecular QTL and GWAS studies
      R
      •
      Other
      •3•9•0•0•Updated Jan 12, 2026Jan 12, 2026

    • xqtl-protocol

      Public
      Molecular QTL analysis protocol developed by ADSP Functional Genomics Consortium
      fungenxqtladsp
      Jupyter Notebook
      •
      MIT License
      •52•47•72•6•Updated Jan 8, 2026Jan 8, 2026

    • statgen-advanced

      Public
      Notes on advanced statistical genetics topics focusing on intuition and modeling choices of methods
      Shell
      •1•4•0•1•Updated Jan 1, 2026Jan 1, 2026

    • simxQTL

      Public
      In house simulation R package to support investigations of various QTL association methods
      R
      •
      MIT License
      •4•0•0•0•Updated Dec 17, 2025Dec 17, 2025

    • xqtl-resources

      Public
      FunGen-xQTL resources navigation
      Jupyter Notebook
      •
      MIT License
      •11•1•0•0•Updated Dec 1, 2025Dec 1, 2025

    • mmcloud

      Public
      Utilities to manage jobs on MMCloud from MemVerge Inc
      Python
      •
      MIT License
      •7•0•1•0•Updated Nov 24, 2025Nov 24, 2025

    • susieR

      Public archive
      R package for "sum of single effects" regression, version 2.0
      R
      •
      Other
      •54•4•0•0•Updated Nov 20, 2025Nov 20, 2025

    • pixi-setup

      Public
      Default software packages installation on PC, Mac, HPC and cloud via pixi
      Python
      •
      MIT License
      •1•1•2•0•Updated Sep 11, 2025Sep 11, 2025

    • colocboost-paper

      Public
      Data and code to reproduce analyses in ColocBoost manuscript
      Jupyter Notebook
      •
      MIT License
      •3•1•0•0•Updated May 9, 2025May 9, 2025

    • SuSiEGLMM.jl

      Public
      Julia package for sum of single effects regression with generalized linear mixed model
      Julia
      •
      MIT License
      •0•0•0•0•Updated Feb 20, 2025Feb 20, 2025