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Add parameters for selective species subset computation and targeted re-runs

Status: Open.

#8 In paliocha/RComPlEx-NF;

· paliocha opened on Dec 18, 2025

Option (b): Pair-specific thresholds after ortholog filtering

Status: Open.

#7 In paliocha/RComPlEx-NF;

· paliocha opened on Dec 13, 2025

Refactor input validation to proper process

Status: Open.

#5 In paliocha/RComPlEx-NF;

· paliocha opened on Dec 10, 2025

Remove unused outputs from PREPARE_PAIR process

Status: Open.

#4 In paliocha/RComPlEx-NF;

· paliocha opened on Dec 10, 2025

Remove hard-coded resource directives from process definitions

Status: Open.

#3 In paliocha/RComPlEx-NF;

· paliocha opened on Dec 10, 2025

Remove 'module load R' from FIND_CLIQUES process

Status: Open.

#2 In paliocha/RComPlEx-NF;

· paliocha opened on Dec 10, 2025

Remove hard-coded filesystem paths from process scripts

Status: Open.

#1 In paliocha/RComPlEx-NF;

· paliocha opened on Dec 10, 2025