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The pyMBE dataframe is monolithic

code quality

Status: Open.

Feature

#146 In pyMBE-dev/pyMBE;

· pm-blanco opened on Nov 17, 2025

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pyMBEv2.0.0

Add support for nanoparticle models

enhancementNew feature or requestNew feature or request

Status: Open.

Feature

#144 In pyMBE-dev/pyMBE;

· pm-blanco opened on Oct 21, 2025

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pyMBEv2.0.0

Add support for all bonded potentials

enhancementNew feature or requestNew feature or request

Status: Open.

Feature

#143 In pyMBE-dev/pyMBE;

· pm-blanco opened on Oct 21, 2025

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pyMBEv2.0.0

Add support for multiprotic acids and bases

enhancementNew feature or requestNew feature or request

Status: Open.

Feature

#142 In pyMBE-dev/pyMBE;

· pm-blanco opened on Oct 21, 2025

·  

pyMBEv2.0.0

Utility functions in pyMBE should support hydrogels

enhancementNew feature or requestNew feature or request

Status: Open.

Task

#123 In pyMBE-dev/pyMBE;

· pm-blanco opened on May 9, 2025

·  

pyMBEv2.0.0

The functional test for hydrogels needs to be optimized

ci-improvement

Status: Open.

#122 In pyMBE-dev/pyMBE;

· pm-blanco opened on May 9, 2025

Add support to create dendrimers

enhancementNew feature or requestNew feature or request

Status: Open.

Feature

#67 In pyMBE-dev/pyMBE;

· pm-blanco opened on May 31, 2024

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pyMBEv2.0.0

Add feature for citing resources in pyMBE

documentationImprovements or additions to documentationImprovements or additions to documentation

Status: Open.

#54 In pyMBE-dev/pyMBE;

· pm-blanco opened on May 7, 2024

Add a function to equilibrate a compacted hydrogel

enhancementNew feature or requestNew feature or request

Status: Open.

#38 In pyMBE-dev/pyMBE;

· jngrad opened on Apr 19, 2024

Save reactions in the pmb_df

enhancementNew feature or requestNew feature or request

good first issueGood for newcomersGood for newcomers

Status: Open.

#18 In pyMBE-dev/pyMBE;

· pm-blanco opened on Mar 11, 2024

Improve initialization of proteins and other rigid objects

enhancementNew feature or requestNew feature or request

Status: Open.

#17 In pyMBE-dev/pyMBE;

· pm-blanco opened on Mar 11, 2024

Improve the pyMBE tutorial

documentationImprovements or additions to documentationImprovements or additions to documentation

good first issueGood for newcomersGood for newcomers

Status: Open.

Task

#9 In pyMBE-dev/pyMBE;

· pm-blanco opened on Feb 29, 2024

·  

pyMBEv2.0.0