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Support for bcftools call -m (multiallelic caller) in bamCaller.py

Status: Open.

#61 In stschiff/msmc-tools;

· FWFKI opened on May 16, 2025

generate_multihetsep.py generates no output

Status: Open.

#58 In stschiff/msmc-tools;

· MatteoSebastianelli opened on Jan 6, 2025

To put together the input file

Status: Open.

#56 In stschiff/msmc-tools;

· vlnaraujo opened on Nov 28, 2023

Sudden expansion and contraction of a population

Status: Open.

#55 In stschiff/msmc-tools;

· jaurbanChicago opened on Oct 25, 2023

Two subspecies populations don't coalesce further back in the past

Status: Open.

#50 In stschiff/msmc-tools;

· kaede0e opened on Mar 20, 2023

the command line can not be run with "nohup"

Status: Open.

#49 In stschiff/msmc-tools;

· cnxiaobo94 opened on Feb 21, 2023

generating multihetsep.txt files for whole genomes - multiple chromosomes

Status: Open.

#48 In stschiff/msmc-tools;

· killidude opened on Feb 6, 2023

Is it necessary to analyse all eight haplotypes

Status: Open.

#47 In stschiff/msmc-tools;

· jiangzy26 opened on Nov 11, 2022

Change in time segments with masking

Status: Open.

#46 In stschiff/msmc-tools;

· EEPuckett opened on Aug 31, 2022

AssertionError while using generate_multihetsep.py

Status: Open.

#45 In stschiff/msmc-tools;

· Luker121 opened on Aug 24, 2022

Should the individual mask bed be a subset of Mappability mask ?

Status: Open.

#40 In stschiff/msmc-tools;

· sandyplus opened on May 18, 2021

inconsistencies in population size showing in the latest tutorial

Status: Open.

#39 In stschiff/msmc-tools;

· biozzq opened on May 18, 2021