DOH-JDJ0303 / bigbacter-nf Star 26 Code Issues Pull requests Discussions Bacterial surveillance pipeline. public-health genome-analysis accessory-genome clustering-analysis snp-analysis public-health-surveillance bacterial-genomics Updated Dec 30, 2025 Nextflow
genepattern / GISTIC_2.0 Star 3 Code Issues Pull requests Genomic Identification of Significant Targets in Cancer genepattern-module snp-analysis Updated Feb 22, 2023 HTML
genpat-it / cgDist Star 2 Code Issues Pull requests Discussions Ultra-fast SNP/indel-level distance calculator for core genome MLST analysis in bacterial genomics rust bioinformatics genomics phylogenetics epidemiology mlst cgmlst snp-analysis food-safety recombination-detection outbreak-investigation bacterial-genomics Updated Dec 22, 2025 Rust
lu-vedder / MaizeSNP Star 0 Code Issues Pull requests SNP analysis of different maize (Zea mays L.) inbred lines in comparison to B73 as a reference line bioinformatics genetics maize snp-analysis Updated Feb 20, 2024 Python