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4 changes: 4 additions & 0 deletions .gitignore
Original file line number Diff line number Diff line change
Expand Up @@ -2,6 +2,7 @@
__pycache__/
build/
*.egg-info/
*.ipynb_checkpoints/

# Documentation cruft
docs/_build
Expand All @@ -10,3 +11,6 @@ docs/sg_execution_times.rst

# Editor cruft
*.swp

# Apple cruft
*.DS_Store
53 changes: 53 additions & 0 deletions paper_figures/eval_results/all_results.txt
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@@ -0,0 +1,53 @@
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cellsam_general,0.9114955475266577,Gendarme_BriFi,dec_14_anchor_new_FT_classic_continuation_3_alt_new_sh_v3/checkpoint002739.pth
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cellsam_general,0.9947094282646641,YeastNet,dec_14_anchor_new_FT_classic_continuation_3_alt_new_sh_v3/checkpoint002739.pth
cellsam_general,0.8937110327485136,dsb_fixed,dec_14_anchor_new_FT_classic_continuation_3_alt_new_sh_v3/checkpoint002739.pth
cellsam_general,0.8664808313235363,cellpose,dec_14_anchor_new_FT_classic_continuation_3_alt_new_sh_v3/checkpoint002739.pth
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cellsam_general,0.8943925241426757,tissuenet_wholecell,dec_14_anchor_new_FT_classic_continuation_3_alt_new_sh_v3/checkpoint002739.pth
cellsam_general,0.846632516582404,omnipose,dec_14_anchor_new_FT_classic_continuation_3_alt_new_sh_v3/checkpoint002739.pth
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cellpose_general,0.9899964366211056,YeaZ,./training_january_2025/cellpose_20241009_cp3_epoch_500_LR_0.2_WD_1e-5_size/cellpose_mixed_Max_0_no_CLAHE_no_pad_0shot_chan_3_chan2_2.pt
cellpose_general,0.9860846500005519,YeastNet,./training_january_2025/cellpose_20241009_cp3_epoch_500_LR_0.2_WD_1e-5_size/cellpose_mixed_Max_0_no_CLAHE_no_pad_0shot_chan_3_chan2_2.pt
cellpose_general,0.8856022519784442,dsb_fixed,./training_january_2025/cellpose_20241009_cp3_epoch_500_LR_0.2_WD_1e-5_size/cellpose_mixed_Max_0_no_CLAHE_no_pad_0shot_chan_3_chan2_2.pt
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cellsam/individual,0.8938937567036123,tissuenet_wholecell,./training_january_2025/anchor_01_25_cont_3/tissuenet_wholecell/checkpoint002739.pth
cellsam/individual,0.8130231630030896,omnipose,./training_january_2025/anchor_01_25_cont_3/omnipose/checkpoint002739.pth
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cellpose/individual,0.9250379189518813,Gendarme_BriFi,./training_january_2025/cellpose_20241009_cp3_epoch_500_LR_0.2_WD_1e-5_size/cellpose_Gendarme_BriFi_Max_0_no_CLAHE_no_pad_0shot_chan_3_chan2_2.pt
cellpose/individual,0.9904068807065127,YeaZ,./training_january_2025/cellpose_20241009_cp3_epoch_500_LR_0.2_WD_1e-5_size/cellpose_YeaZ_Max_0_no_CLAHE_no_pad_0shot_chan_3_chan2_2.pt
cellpose/individual,0.9972082561573762,YeastNet,./training_january_2025/cellpose_20241009_cp3_epoch_500_LR_0.2_WD_1e-5_size/cellpose_YeastNet_Max_0_no_CLAHE_no_pad_0shot_chan_3_chan2_2.pt
cellpose/individual,0.8879976689450022,dsb_fixed,./training_january_2025/cellpose_20241009_cp3_epoch_500_LR_0.2_WD_1e-5_size/cellpose_dsb_fixed_Max_0_no_CLAHE_no_pad_0shot_chan_3_chan2_2.pt
cellpose/individual,0.8559837120640661,cellpose,./training_january_2025/cellpose_20241009_cp3_epoch_500_LR_0.2_WD_1e-5_size/cellpose_cellpose_Max_0_no_CLAHE_no_pad_0shot_chan_3_chan2_2.pt
cellpose/individual,0.8108379796652139,H_and_E,./training_january_2025/cellpose_20241009_cp3_epoch_500_LR_0.2_WD_1e-5_size/cellpose_H_and_E_Max_0_no_CLAHE_no_pad_0shot_chan_3_chan2_2.pt
cellpose/individual,0.9384103928725154,ep_phase_microscopy_all,./training_january_2025/cellpose_20241009_cp3_epoch_500_LR_0.2_WD_1e-5_size/cellpose_ep_phase_microscopy_all_Max_0_no_CLAHE_no_pad_0shot_chan_3_chan2_2.pt
cellpose/individual,0.8719401414468197,tissuenet_wholecell,./training_january_2025/cellpose_20241009_cp3_epoch_500_LR_0.2_WD_1e-5_size/cellpose_tissuenet_wholecell_Max_0_no_CLAHE_no_pad_0shot_chan_3_chan2_2.pt
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cellpose/general,0.4993479290305242,LIVECell_good,dec_14_anchor_new_FT_classic_continuation_3_alt_new_sh_v3/checkpoint002739.pth
cellsam/general_FS_10_FT,0.6340405966856812,LIVECell_good,anchor_01_25_cont_fewshot/livecell/checkpoint002799.pth
22 changes: 22 additions & 0 deletions paper_figures/eval_results/cellpose/cyto3/Gendarme_BriFi.txt
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92 changes: 92 additions & 0 deletions paper_figures/eval_results/cellpose/cyto3/deepbacs.txt
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56 changes: 56 additions & 0 deletions paper_figures/eval_results/cellpose/cyto3/dsb_fixed.txt
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