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@wtsi-npg

Wellcome Sanger Institute - NPG

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  1. illumina2bam illumina2bam Public

    Generate and process BAM files from Illumina sequencing instrument files

    Java 23 15

  2. baton baton Public

    iRODS client programs and API

    C 20 20

  3. npg_seq_pipeline npg_seq_pipeline Public

    Processing and analysis of data coming from Illumina sequencing machines

    Perl 10 17

  4. bambi bambi Public

    Process Illumina instrument data into SAM/BAM/CRAM files.

    C 10 15

  5. Percolate Percolate Public archive

    A parallel workflow management application.

    Ruby 6 3

  6. npg_qc npg_qc Public

    QC checks and metrics for Illumina NGS data

    Perl 6 18

Repositories

Showing 10 of 86 repositories
  • npg_ml_warehouse Public

    Analysis results loader for the multi-lims warehouse, see ml_warehouse project for the warehouse details.

    wtsi-npg/npg_ml_warehouse’s past year of commit activity
    Perl 0 14 9 3 Updated Jan 16, 2026
  • npg_irods Public

    Tools for managing HTS (BAM and CRAM) format files in iRODS.

    wtsi-npg/npg_irods’s past year of commit activity
    Perl 3 GPL-3.0 17 17 2 Updated Jan 16, 2026
  • npg-python-lib Public

    A library of Python functions and classes common to NPG applications

    wtsi-npg/npg-python-lib’s past year of commit activity
    Python 0 GPL-3.0 1 0 1 Updated Jan 16, 2026
  • npg-irods-python Public

    Applications for the management of data and metadata in iRODS

    wtsi-npg/npg-irods-python’s past year of commit activity
    Python 2 GPL-3.0 10 2 2 Updated Jan 16, 2026
  • partisan Public

    A Python client API for iRODS

    wtsi-npg/partisan’s past year of commit activity
    Python 3 GPL-3.0 6 0 1 Updated Jan 16, 2026
  • npg_qc Public

    QC checks and metrics for Illumina NGS data

    wtsi-npg/npg_qc’s past year of commit activity
    Perl 6 18 20 1 Updated Jan 15, 2026
  • extendo Public

    An extension to baton providing a Go API for iRODS (Integrated Rule-Oriented Data System)

    wtsi-npg/extendo’s past year of commit activity
    Go 0 GPL-3.0 3 0 2 Updated Jan 13, 2026
  • valet Public

    Automated data mangement for Oxford Nanopore DNA sequencing instruments

    wtsi-npg/valet’s past year of commit activity
    Go 2 GPL-3.0 4 4 2 Updated Jan 12, 2026
  • sqyrrl Public

    Sqyrrl - an HTTP server for files hosted in iRODS

    wtsi-npg/sqyrrl’s past year of commit activity
    Go 1 GPL-3.0 3 1 4 Updated Jan 12, 2026
  • npg_tracking Public

    WTSI Illumina sequencing instruments (HiSeq, MiSeq, GA) tracking

    wtsi-npg/npg_tracking’s past year of commit activity
    Perl 4 19 12 1 Updated Jan 9, 2026
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