This repository provides scripts and analysis notebook files used in Ishiguro, Ishida, Sakata et al. "A multi-kingdom genetic barcoding system for precise target clone isolation".
FACS: Scripts and notebook files for processing and visualization of flowcytometry dataBarcode_identification/CloneSelect: Scripts used for CloneSelect barcode analysisBarcode_identification/scCloneSelect: Scripts used for scCloneSelect analysis and visualizationDrop-seq: Scripts used for scRNA-seq data processing and visualizationMutational_Spectra_Analysis: Analysis and visualization scripts for genome editing assaysImage_Processing: Python scripts for batch processing of microscope images.Visualization: R scripts for various data visualizationQUEEN: Python notebook to generate newly constructed plasmids in this study. Output gbk files are also available.