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fix ehr data validation queries #670

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Merged
ankurjuneja merged 2 commits into from
Oct 2, 2023
Merged

fix ehr data validation queries #670

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5947287
fix ehr data validation queries
ankurjuneja Oct 2, 2023
79a2144
fix animal ids that are dams and sires query
ankurjuneja Oct 2, 2023
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16 changes: 4 additions & 12 deletions ehr/resources/queries/study/animalIdsAsDamAndSire.sql
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Original file line number Diff line number Diff line change
@@ -1,14 +1,6 @@

SELECT DISTINCT dam AS Id,
gender,
species
SELECT Id.parents.dam AS parent,
gender,
species
FROM demographics
WHERE dam IN (SELECT sire FROM demographics)

UNION

SELECT DISTINCT sire AS Id,
gender,
species
FROM demographics
WHERE sire IN (SELECT dam FROM demographics);
WHERE Id.parents.dam IN (SELECT Id.parents.sire FROM demographics)
4 changes: 2 additions & 2 deletions ehr/resources/queries/study/parentsDifferentSpecies.sql
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Expand Up @@ -14,7 +14,7 @@ SELECT
ELSE FALSE
END as parentSpeciesMismatch
FROM demographics d1
LEFT JOIN demographics d2 ON d1.dam = d2.Id
LEFT JOIN demographics d3 ON d1.sire = d3.Id
LEFT JOIN demographics d2 ON d1.Id.parents.dam = d2.Id
LEFT JOIN demographics d3 ON d1.Id.parents.sire = d3.Id
) d4
WHERE d4.parentSpeciesMismatch = TRUE
4 changes: 2 additions & 2 deletions ehr/resources/queries/study/parentsIncorrectGender.sql
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Original file line number Diff line number Diff line change
Expand Up @@ -14,7 +14,7 @@ SELECT
ELSE FALSE
END as parentSpeciesMismatch
FROM demographics d1
LEFT JOIN demographics d2 ON d1.dam = d2.Id
LEFT JOIN demographics d3 ON d1.sire = d3.Id
LEFT JOIN demographics d2 ON d1.Id.parents.dam = d2.Id
LEFT JOIN demographics d3 ON d1.Id.parents.sire = d3.Id
) d4
WHERE d4.parentSpeciesMismatch = TRUE
8 changes: 4 additions & 4 deletions ehr/resources/queries/study/parentsYoungerThanOffspring.sql
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Expand Up @@ -5,12 +5,12 @@ FROM (
dem.gender,
dem.species,
dem.birth,
dem.dam,
dem.Id.parents.dam,
damDem.birth as damBirth,
dem.sire,
dem.Id.parents.sire,
sireDem.birth as sireBirth
FROM demographics dem
LEFT JOIN demographics damDem ON dem.dam = damDem.Id
LEFT JOIN demographics sireDem ON dem.sire = sireDem.Id
LEFT JOIN demographics damDem ON dem.Id.parents.dam = damDem.Id
LEFT JOIN demographics sireDem ON dem.Id.parents.sire = sireDem.Id
) t
WHERE (t.birth <= t.damBirth OR t.birth <= t.sireBirth)